cv

Basics

Name Temitope Adeoye
Email tadeoye@usf.edu
Summary Applying systems biology methods in biophysics and genomics to better understand dysfunction in neurological disorders.

Education

  • 2019.08 - 2023.12

    Tampa, Florida

    Master of Science (MSc)
    University of South Florida
    Applied Physics: Computational Biophysics and Neurobiology
    • Biophysics
    • Applied Bioinformatics
    • Theoretical Physics
  • 2019.08 - 2025.05

    Tampa, Florida

    Doctor of Philosophy (PhD)
    University of South Florida
    Applied Physics: Computational Biophysics and Neurobiology
    • Biophysics
    • Applied Bioinformatics
    • Theoretical Physics
  • 2012.09 - 2017.01

    Lagos, Nigeria

    Bachelor of Science (BSc)
    University of Lagos
    Applied Physics: Electronics
    • Theoretical Physics

Work

  • 2025.05 - 2025.08
    Incoming Intern, Computational Biology, Neuroscience and Ophthalmology Therapeutic Area Genetics
    Regeneron Genetics Centere
    Primary work here will focus on integrating single-nucleus RNA-seq, single cell eQTL, and ATAC-seq data to annotate top hits from genetic perturbation studies with cell types or cell states, and pinpoint specific signatures associated with such signals
    • Single-cell multi-omics
    • GWAS
    • Functional Genomics
    • Variant Effect Prediction
    • Bioinformatics
    • Systems Biology
    • Statistics
    • Machine Learning
  • 2022.05 - 2022.08
    Research Intern, Human Multi-omics
    Cajal Neuroscience
    My work here focused on developing deep learning pipelines for mapping and contextualizing single-cell sequencing data to aid rapid integration of new datasets into reference atlases. The project involved implementing an interpretable deep learning approach with explainable embeddings to create biologically informed latent representations, and deploying standardized bioinformatic workflows to identify cell states, differential expression patterns, and trajectories in Alzheimer's and Parkinson's disease (PD) models.
    • Single-cell multi-omics
    • Bioinformatics
    • Machine Learning
  • 2021.08 - 2022.05
    Bioinformatics Research Student
    University of South Florida
    Investigated the role of intrinsic disorder in Ebola and Marburg virus proteins and its potential implications for virulence.
    • Intrinsically Disordered Proteins
  • 2019.09 - 2025.05
    Graduate Research Asssistant
    Computational Biophysics Group, University of South Florida
    Primary research has focused on applying theoretical and computational techniques as well as single-cell multi-omics to understand the molecular and cellular mechanisms of synaptic dysfunction in Alzheimer’s disease (AD). This has involved investigating neuronal signaling pathways and gene programs affected in AD and their impact on synaptic plasticity. These research experiences have resulted in two publications and multiple collaborations.
    • Single-cell multi-omics
    • Biophysics
    • Bioinformatics
    • Systems Biology
    • Statistics
    • Machine Learning

Awards

  • 2024.08
    Trainee Professional Development Award
    Soceity for Neuroscience
    This award is given to graduate students who demonstrate scientific merit and excellence in research.
  • 2024.05
    Tharp and Duckwall Summer Research Fellowship
    College of Arts and Sciences, University of South Florida
    This is awarded in recognition of accomplishments as a graduate student and in support of continuing research and scholarship activities.
  • 2012.2017
    University of Lagos Endowment Prize
    University of Lagos
    This award is given to students who maintain a GPA of 4.5 and above (3.6 on a 4.0 scale) in each semester.
  • 2012.2017
    Dean's Award
    University of Lagos
    Honors recognizing the best graduating student from the program, the Department of Physics

Certificates

Deep Learning for Neuroscience
Neuromatch Academy 2021-08-21
Computational Neuroscience
Neuromatch Academy 2020-07

Publications

Skills

Programming/Scripting Languages
Python
R
Bash
MATLAB
SQL
FORTRAN
Machine Learning Frameworks
Keras
scikit-learn
TensorFlow
scipy
PyTorch
statsmodels
Research-relevant Open-source Libraries
Single-cell (RNA, ATAC, & spatial) -omics libraries
scanpy
squidpy
scvi-tools
hdWGCNA
GSVA
SCENIC+
ArchR
Biopython
Parallel Computing
CUDA
mpi4py
High Performance Computing
Amazon Sagemaker
Terra Community Workbench
Google Cloud Platform
Code Development
Git
Github
Visual Studio
Docker
Anaconda

Projects